Chemical Master equation

A brief description for the Chemical Master equation.

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Tutorial

A guide for the usage of the python interface.

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ReadTheDocs

Documentation for atropy.

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Installation

The package can be found on PyPI and the installation can thus be executed using uv by astral or the classical pip download. We recommend the approach using uv, due to faster installation times.

uv installation

Generate a uv virtual environment by executing

uv venv <environment_name> --python <python_version>

The environment can be found in the current shell directory.

Next activate the environment with

source <path_to_environment>/bin/activate

Now one can download atropy using the python packaging index

uv pip install atropy

The package is installed in <path_to_environment>/lib/python<python_version>/site-packages with all the dependencies, which were also downloaded from PyPI.

pip installation

Using classical pip installation execute

pip install atropy

Again, using a virtual environment is still recommended.

Examples

The following video shows an example resulting from the atropy code: